bionty.CellType#

class bionty.CellType(species='human', database=None, version=None)#

Bases: Entity

Cell type ontologies.

1. Cell ontology Edits of terms are coordinated and reviewed on: obophenotype/cell-ontology

2. Human cell atlas ontology Edits of terms are coordinated and reviewed on: HumanCellAtlas/ontology

Parameters:

  • species – name of Species entity.

  • database – The key of the database in the local.yml versions file. Get all available databases with bionty.display_available_versions.

  • version – The version of the ontology. Typically a date or an actual version. Get available versions with bionty.display_available_versions.